Utils

Utility functions for data preprocessing and the Streamlit web interface.

scfocus.utils.preprocess	Preprocess single-cell RNA-seq data using scanpy.
scfocus.utils.run_umap	Compute UMAP embedding for single-cell data.
scfocus.utils.run_tsne	Compute t-SNE embedding for single-cell data.
scfocus.utils.run_focus	Run scFocus analysis on embedding data.
scfocus.utils.read_files	Read uploaded single-cell data files and return an AnnData object.
scfocus.utils.read_uploaded_file	Read a single uploaded file and return an AnnData object.
scfocus.utils.read_10x_files	Read 10x Genomics files (compressed or uncompressed) and return an AnnData object.